The episode plot included "remote control" of aircraft in a "war games" scenario and a "faction within government" behind it for post-Cold War purposes and counter-terrorism wars. Even "110 souls onboard" the aircraft are mentioned (another cryptic 11 reference). The Youtube clip is just 4 minutes.

What are the odds of this coincidence just 6 months prior while the government and 9/11 commission said "no one could have predicted flying planes into towers"? In fact the 9/11 cover-up Commission stated:

...there was a failure of imagination

Of course war games were going on in real time in NYC and NORAD on Sept 11th, but just another "coincidence" of course.

Interesting, to say the least. I remain open to alternatives to the storyline.