<div style="margin: 12px 0px; font-family: arial; color: #333333; background: #ffffff; border: solid 4px #e5e5e5; width: 100%; clear: left;"><div class="CM_CTB_Content_Wrap" style="margin: 0px; padding: 0px;background-color: #ffffff;"><div style="border-bottom: solid 1px #dcdcdc; white-space: nowrap; margin-bottom: 8px; background-color: #eeeeee ;background-image: url(http://clipmarks.com/images/source-bg.gif); background-repeat: repeat-x; height: 24px; line-height: 24px; vertical-align: middle; padding-bottom: 4px; color: #666666; font-size: 10px;" ><a href="http://clipmarks.com/clip-to-blog/" title="see clips that are hot right now"><img src="http://content.clipmarks.com/blog_embed/e8f20c33-4bc1-4284-95a0-5ed5dddda30f/0C96F1B8-F86F-4EA0-8949-201470EEFE0E/" alt="" width="19" height="19" border="0" style="vertical-align: middle; margin: 0px 4px; display: inline; border: none; float:none;" /></a>clipped from <a title="http://greengenes.lbl.gov/cgi-bin/nph-tools_in_development.cgi" href="http://greengenes.lbl.gov/cgi-bin/nph-tools_in_development.cgi" style="font-size: 11px;">greengenes.lbl.gov</a></div><blockquote style="text-align: left; padding: 0px 8px; margin: 4px 0px 8px 0px; background: transparent; border: none;" cite="http://greengenes.lbl.gov/cgi-bin/nph-tools_in_development.cgi"><table background="undefined" bgcolor=""><tr><TD width="100%" valign="top" align="left"><TABLE width="100%" cellspacing="0" cellpadding="1" border="0" class="dark"><TBODY><TR><TD align="left" class="title"><FONT class="title">More Tools in Development Phase</FONT> </TD></TR><TR><TD><TABLE width="100%" cellspacing="0" cellpadding="8" border="0" class="light"><TBODY><TR><TD><SPAN class="title"> More tools for use with the greengenes web application: </SPAN> <BR /><DIV> These tools are available on a sporadic basis and are not yet fully tested and/or implemented. Consider this list to be a preview of what is to come. </DIV> <UL type="disc"> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Browse%20breadth%20of%20probe%20hybridization%20%0A%09%09%09for%20a%20given%20taxa" href="http://greengenes.lbl.gov/cgi-bin/nph-probe_breadth.cgi" class="menu">Probe Breadth</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG> Global Probe Breadth Evaluation </STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Pick%20PCR%20primers/probes%20for%20a%20taxon" href="http://greengenes.lbl.gov/cgi-bin/primer3/primer3_www_OTU_specific.cgi" class="menu">PrimeTaxa</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="SuperUser%20Only:%20Overwrite%20particular%20db%20fields" href="http://greengenes.lbl.gov/cgi-bin/nph-array_summary.cgi" class="menu">Browse 16S rDNA environmental microarry results</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Display%20G2%20chip%20probe%20locations%20for%20selected%20OTUs" href="http://greengenes.lbl.gov/cgi-bin/nph-show_probes_2_otu_alignments.cgi" class="menu">Display G2 chip probes aligned to OTUs in My Interest List</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Find%20duplicate%20lines%20in%20my%20text%20file" href="http://greengenes.lbl.gov/cgi-bin/nph-find_duplicates_in_list.cgi" class="menu">Find Duplicates</A></STRONG></FONT></P> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Add%20taxonomic%20classifications%20to%20a%20batch%20of%20aligned%20sequences" href="http://greengenes.lbl.gov/cgi-bin/nph-classify.cgi" class="menu">Classify a batch of your sequences</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Produce%20a%20distance%20matrix%20from%20a%20batch%20of%20aligned%20sequences" href="http://greengenes.lbl.gov/cgi-bin/nph-distance_matrix.cgi" class="menu">Create distance matrix</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Add%20specific%20sequences%20to%20My%20Interest%20List%20using%20sequence%20identifiers" href="http://greengenes.lbl.gov/cgi-bin/nph-add_to_InterestList.cgi" class="menu">Mark sequences with uploaded list</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Create%20a%20small%20set%20of%20unique%20sequences%20from%20a%20larger%20set%20by%20clustering" href="http://greengenes.lbl.gov/cgi-bin/nph-choose_dereplicated_set.cgi" class="menu">Choose a de-replicated set</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Check%20your%20aligned%20sequences%20for%20chimeras." href="http://greengenes.lbl.gov/cgi-bin/nph-bel3_interface.cgi" class="menu">Chimera check with Bellerophon (version 3)</A></STRONG></FONT></p> </LI> <li style="margin-left:16px;padding-left: 0px;"><P align="left"><FONT face="Tahoma"><STRONG><A title="Mask%20columns%20in%20your%20aligned%20sequence%20file%20using%20Lane%20Mask." href="http://greengenes.lbl.gov/cgi-bin/nph-mask_lanes.cgi" class="menu">Mask columns</A></STRONG></FONT></p> </LI></UL> </TD></TR></TBODY></TABLE></TD></TR></TBODY></TABLE></TD></tr></table></blockquote></div><div style="margin: 0px 6px 6px 4px;"><table style="font-size: 11px;border-spacing: 0px;padding: 0px;" cellpadding="0" cellspacing="0" width="100%"><tr><td style="background:transparent;border-width:0px;padding:0px;">&nbsp;</td><td align="right" style="background:transparent;border-width:0px;padding:0px;width:107px" width="107"><a href="http://clipmarks.com/share/0C96F1B8-F86F-4EA0-8949-201470EEFE0E/blog/" title="blog or email this clip"><img src="http://content7.clipmarks.com/images/c2b-foot.png" border="0" alt="blog it" width="107" height="17" style="border-width:0px;padding:0px;margin:0px;" /></a></td></tr></table></div></div>

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